We run a daily policy action on the root server itself to sort out the uploads from the prior day and copy them out to other drives/shares by type/purpose of file based on naming conventions of the files and the computers. Consumers of the files go to their respective share with permissions tailored to them. We’ve used this approach successfully for several years.
In one case where we were doing mass log gathering for troubleshooting for a particular vendor’s software, we took it a step further and actually added a step to automatically ftp all the relevant logs to the software vendor daily until the issue was fixed. Sure beats doing it manually.